I don't think so as long as you only delete sounds and styles in the /user folder(s) not the actual folders but everything underneath those folders. One quick way to verify - Connect to PC/Mac - Copy all of the folders, then delete the content in the user folders. Test the SD9. If something is amiss copy all the content back from the backup copy, you just made.
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Curt
https://immusic.co
MIDI, Music and Keyboard Fun!