The USB port on the back of AUDYA can be used for ...
A. Data transfer between AUDYA's Hard Drive and your computer (in which case MENU - MIDI - UTILITY - USB MIDI = "--")
OR
B. MIDI communication with external USB Midi divices (in which case USB MIDI = "ON".) [which is the answer to your case above]
The ON/OFF is set by pressing F6 to toggle between both values.
Hope this helps.
Thanks,
AJ