I'll check out your suggestions, thanks.
The one that was just a tad flat had one tone with a random pitch depth of maybe -3. Setting it to 0 seemed to clear the problem up.
The other patch was the preset Crunch Split. That was the one that was consistantly sharp by a whole tone. It has never done that to me before. And I never, as a rule, touch the pitch bend. But I haven't worked on that song in several weeks, and coming back to it, some of my patches were overwritten. So maybe something funky got in there by mistake.
At least you've given me food for thought -- Thanks!